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Abstract:

We use a recently developed coarse-grained model to simulate the overstretching of duplex DNA. Overstretching at 23 °C occurs at 74 pN in the model, about 6-7 pN higher than the experimental value at equivalent salt conditions. Furthermore, the model reproduces the temperature dependence of the overstretching force well. The mechanism of overstretching is always force-induced melting by unpeeling from the free ends. That we never see S-DNA (overstretched duplex DNA), even though there is clear experimental evidence for this mode of overstretching under certain conditions, suggests that S-DNA is not simply an unstacked but hydrogen-bonded duplex, but instead probably has a more exotic structure. © 2013 American Institute of Physics.

Abstract:

We consider the reduced density matrix (RDM) ρ_A(t) for a finite subsystem A after a global quantum quench in the infinite transverse-field Ising chain. It has been recently shown that the infinite time limit of ρ_A(t) is described by the RDM ρ_{GGE,A} of a generalized Gibbs ensemble. Here we present some details on how to construct this ensemble in terms of local integrals of motion, and show its equivalence to the expression in terms of mode occupation numbers widely used in the literature. We then address the question, how ρ_A(t) approaches ρ_{GGE,A} as a function of time. To that end we introduce a distance on the space of density matrices and show that it approaches zero as a universal power-law t^{-3/2} in time. As the RDM completely determines all local observables within A, this provides information on the relaxation of correlation functions of local operators. We then address the issue, of how well a truncated generalized Gibbs ensemble with a finite number of local higher conservation laws describes a given subsystem at late times. We find that taking into account only local conservation laws with a range at most comparable to the subsystem size provides a good description. However, excluding even a single one of the most local conservation laws in general completely spoils this agreement.

Abstract:

The flow properties of a continuum model for an active nematic is studied and compared with recent experiments on suspensions of microtubule bundles and molecular motors. The velocity correlation length is found to be independent of the strength of the activity while the characteristic velocity scale increases monotonically as the activity is increased, both in agreement with the experimental observations. We interpret our results in terms of the creation and annihilation dynamics of a gas of topological defects.