Deep learning for automatic segmentation of the nuclear envelope in electron microscopy data, trained with volunteer segmentations
Traffic Wiley 22:7 (2021) 240-253
Abstract:
Advancements in volume electron microscopy mean it is now possible to generate thousands of serial images at nanometre resolution overnight, yet the gold standard approach for data analysis remains manual segmentation by an expert microscopist, resulting in a critical research bottleneck. Although some machine learning approaches exist in this domain, we remain far from realizing the aspiration of a highly accurate, yet generic, automated analysis approach, with a major obstacle being lack of sufficient high-quality ground-truth data. To address this, we developed a novel citizen science project, Etch a Cell, to enable volunteers to manually segment the nuclear envelope (NE) of HeLa cells imaged with serial blockface scanning electron microscopy. We present our approach for aggregating multiple volunteer annotations to generate a high-quality consensus segmentation and demonstrate that data produced exclusively by volunteers can be used to train a highly accurate machine learning algorithm for automatic segmentation of the NE, which we share here, in addition to our archived benchmark data.The Simons Observatory: Bandpass and polarization-angle calibration requirements for B-mode searches
Journal of Cosmology and Astroparticle Physics IOP Publishing (2021)
Abstract:
We quantify the calibration requirements for systematic uncertainties on bandpasses and polarization angles for next-generation ground-based observatories targeting the large-angle $B$-mode polarization of the Cosmic Microwave Background, with a focus on the Simons Observatory (SO). We explore uncertainties on bandpass gain calibration, center frequencies, and polarization angles, including the frequency variation of the latter across the bandpass. We find that bandpass calibration factors and center frequencies must be known to percent levels or less to avoid biases on the tensor-to-scalar ratio $r$ on the order of $\Delta r\sim10^{-3}$, in line with previous findings. Polarization angles must be calibrated to the level of a few tenths of a degree, while their frequency variation between the edges of the band must be known to ${\cal O}(10)$ degrees. Given the tightness of these calibration requirements, we explore the level to which residual uncertainties on these systematics would affect the final constraints on $r$ if included in the data model and marginalized over. We find that the additional parameter freedom does not degrade the final constraints on $r$ significantly, broadening the error bar by ${\cal O}(10\%)$ at most. We validate these results by reanalyzing the latest publicly available data from the BICEP2 / Keck Array collaboration within an extended parameter space covering both cosmological, foreground and systematic parameters. Finally, our results are discussed in light of the instrument design and calibration studies carried out within SO.Planet Hunters TESS III: two transiting planets around the bright G dwarf HD 152843
Monthly Notices of the Royal Astronomical Society Oxford University Press (OUP) (2021)
Abstract:
We report on the discovery and validation of a two-planet system around a bright (V = 8.85 mag) early G dwarf (1.43 $R_{\odot}$, 1.15 $M_{\odot}$, TOI 2319) using data from NASA's Transiting Exoplanet Survey Satellite (TESS). Three transit events from two planets were detected by citizen scientists in the month-long TESS light curve (sector 25), as part of the Planet Hunters TESS project. Modelling of the transits yields an orbital period of \Pb\ and radius of $3.41 _{ - 0.12 } ^ { + 0.14 }$ $R_{\oplus}$ for the inner planet, and a period in the range 19.26-35 days and a radius of $5.83 _{ - 0.14 } ^ { + 0.14 }$ $R_{\oplus}$ for the outer planet, which was only seen to transit once. Each signal was independently statistically validated, taking into consideration the TESS light curve as well as the ground-based spectroscopic follow-up observations. Radial velocities from HARPS-N and EXPRES yield a tentative detection of planet b, whose mass we estimate to be $11.56 _{ - 6.14 } ^ { + 6.58 }$ $M_{\oplus}$, and allow us to place an upper limit of $27.5$ $M_{\oplus}$ (99 per cent confidence) on the mass of planet c. Due to the brightness of the host star and the strong likelihood of an extended H/He atmosphere on both planets, this system offers excellent prospects for atmospheric characterisation and comparative planetology.EDGE: two routes to dark matter core formation in ultra-faint dwarfs
Monthly Notices of the Royal Astronomical Society Oxford University Press (OUP) 504:3 (2021) 3509-3522
Abstract:
An old stellar population or diffuse nebular continuum emission discovered in Green Pea galaxies
Astrophysical Journal Letters American Astronomical Society 912:2 (2021) L22